Exploring and verifying the acoustic presence of southern right whales (Eubalaena australis) off Elephant Island, Antarctica.

Passive acoustic monitoring (PAM) can be used to monitor acoustic presence and behaviour of cetaceans, providing continuous, long-term, and seasonally unbiased data. The efficiency of PAM methods, however, depends on the ability to detect and correctly interpret acoustic signals. The upcall is the most prevalent vocalization of the southern right whale (Eubalaena australis) and is commonly used as a basis for PAM studies on this species. However, previous studies report difficulties to distinguish between southern right whale upcalls and similar humpback whale (Megaptera novaeangliae) vocalizations with certainty. Recently, vocalizations comparable to southern right whale upcalls were detected off Elephant Island, Antarctica. In this study, these vocalizations were structurally analyzed, and call characteristics were compared to (a) confirmed southern right whale vocalizations recorded off Argentina and (b) confirmed humpback whale vocalizations recorded in the Atlantic Sector of the Southern Ocean. Based on call features, detected upcalls off Elephant Island could be successfully attributed to southern right whales. Measurements describing slope and bandwidth were identified as the main differences in call characteristics between species. With the newly gained knowledge from this study, additional data can be analyzed providing further insight into temporal occurrence and migratory behaviour of southern right whales in Antarctic waters.

Song recordings suggest feeding ground sharing in Southern Hemisphere humpback whales.

The Atlantic sector of the Southern Ocean (ASSO) has one of the highest densities of Antarctic krill (Euphausia superba) compared to other polar and subpolar regions, which attracts migratory baleen whale species to aggregate in this area for feeding. Humpback whales (Megaptera novaeangliae) also sing extensively while on the Southern Ocean feeding grounds which allows for the exploration of song similarity between feeding grounds and breeding populations which helps to understand population mixing. The results of comparative song analyses between the ASSO and the Ecuadorian and Brazilian breeding populations and recordings from the Chilean, South African and Namibian migration routes/mid-latitude feeding grounds revealed that individuals from at least three humpback whale breeding populations most likely migrate to shared feeding grounds in the ASSO. Humpback whales from different populations potentially mix at different times (i.e., years) at feeding hotspots in variable locations. The ASSO seems to provide sufficient prey resources and seems to present an important area for both cultural and maybe even genetic exchange between populations supporting the maintenance of large gene pools. Assuming that multi-population feeding hotspots are also suitable habitat for krill and other krill-dependent predators, these areas in the ASSO should be carefully managed integrating population, ecosystem and fisheries management.

Strong and lasting impacts of past global warming on baleen whales and their prey.

Global warming is affecting the population dynamics and trophic interactions across a wide range of ecosystems and habitats. Translating these real-time effects into their long-term consequences remains a challenge. The rapid and extreme warming period that occurred after the Last Glacial Maximum (LGM) during the Pleistocene-Holocene transition (7-12 thousand years ago) provides an opportunity to gain insights into the long-term responses of natural populations to periods with global warming. The effects of this post-LGM warming period have been assessed in many terrestrial taxa, whereas insights into the impacts of rapid global warming on marine taxa remain limited, especially for megafauna. In order to understand how large-scale climate fluctuations during the post-LGM affected baleen whales and their prey, we conducted an extensive, large-scale analysis of the long-term effects of the post-LGM warming on abundance and inter-ocean connectivity in eight baleen whale and seven prey (fish and invertebrates) species across the Southern and the North Atlantic Ocean; two ocean basins that differ in key oceanographic features. The analysis was based upon 7032 mitochondrial DNA sequences as well as genome-wide DNA sequence variation in 100 individuals. The estimated temporal changes in genetic diversity during the last 30,000 years indicated that most baleen whale populations underwent post-LGM expansions in both ocean basins. The increase in baleen whale abundance during the Holocene was associated with simultaneous changes in their prey and climate. Highly correlated, synchronized and exponential increases in abundance in both baleen whales and their prey in the Southern Ocean were indicative of a dramatic increase in ocean productivity. In contrast, the demographic fluctuations observed in baleen whales and their prey in the North Atlantic Ocean were subtle, varying across taxa and time. Perhaps most important was the observation that the ocean-wide expansions and decreases in abundance that were initiated by the post-LGM global warming, continued for millennia after global temperatures stabilized, reflecting persistent, long-lasting impacts of global warming on marine fauna.

Humpback whale song recordings suggest common feeding ground occupation by multiple populations.

Humpback whale males are known to sing on their low-latitude breeding grounds, but it is well established that songs are also commonly produced 'off-season' on the feeding grounds or during migration. This opens exciting opportunities to investigate migratory aggregations, study humpback whale behavioral plasticity and potentially even assign individual singers to specific breeding grounds. In this study, we analyzed passive acoustic data from 13 recording positions and multiple years (2011-2018) within the Atlantic sector of the Southern Ocean (ASSO). Humpback whale song was detected at nine recording positions in five years. Most songs were recorded in May, austral fall, coinciding with the rapid increase in sea ice concentration at most recording positions. The spatio-temporal pattern in humpback whale singing activity on Southern Ocean feeding grounds is most likely shaped by local prey availability and humpback whale migratory strategies. Furthermore, the comparative analyses of song structures clearly show a differentiation of two song groups, of which one was solely recorded at the western edge of the ASSO and the other song group was recorded throughout the ASSO. This new finding suggests a common feeding ground occupation by multiple humpback whale populations in the ASSO, allowing for cultural and potentially even genetic exchange among populations.

Acoustic metrics to assess humpback whale song unit structure from the Atlantic sector of the Southern ocean.

Acoustic metrics (AMs) aggregate the acoustic information of a complex signal into a unique number, assisting our interpretation of acoustic environments and providing a rapid and intuitive solution to analyze large passive acoustic datasets. Manual identification and characterization of intraspecific call trait variation has been largely used in a variety of sonic taxa. However, it is time consuming, relatively subjective, and measurements can suffer from low replicability. This study assesses the potential of using a combination of standardized and automatically computed AMs to train a supervised classification model, as an alternative to discrimination protocols and manual measurements to categorize humpback whale (Megaptera novaeangliae) song units from the Southern Ocean. Our random forest model successfully discriminated between the 12 humpback whale unit types (UT), achieving an average classification accuracy of 84%. UTs were further described and discussed in the context of the hierarchical structure of humpback whale song in the Southern Ocean. We show that accurate discriminant models based on relevant AM combinations provide an interesting automated solution to use for simple, rapid, and highly reproducible identification and comparison of vocalization types in humpback whale populations, with the potential to be applied to both aquatic and terrestrial contexts, on other vocal species, and over different acoustic scales.

Seasonal and diel cycles of fin whale acoustic occurrence near Elephant Island, Antarctica.

This study investigates the relevance of the Elephant Island (EI) region for Southern Hemisphere fin whales (Balaenoptera physalus) in their annual life cycle. We collected 3 years of passive acoustic recordings (January 2013 to February 2016) northwest of EI to calculate time series of fin whale acoustic indices, daily acoustic occurrence, spectrograms, as well as the abundance of their 20 Hz pulses. Acoustic backscatter strength, sea ice concentration and chlorophyll-a composites provided concurrent environmental information for graphic comparisons. Acoustic interannual, seasonal and diel patterns together with visual information and literature resources were used to define the period of occupancy and to infer potential drivers for their behaviour. Spectral results suggest that these fin whales migrate annually to and from offshore central Chile. Acoustic data and visual information reveal their arrival at EI in December to feed without producing their typical 20 Hz pulse. For all 3 years, acoustic activity commences in February, peaks in May and decreases in August, in phase with the onset of their breeding season. Our results emphasize the importance of EI for fin whales throughout most of the year. Our recommendation is to consider EI for establishing a marine protected area to expedite the recovery of this vulnerable species.

Multi-year presence of humpback whales in the Atlantic sector of the Southern Ocean but not during El Niño.

Humpback whales are thought to undertake annual migrations between their low latitude breeding grounds and high latitude feeding grounds. However, under specific conditions, humpback whales sometimes change their migratory destination or skip migration overall. Here we document the surprising persistent presence of humpback whales in the Atlantic sector of the Southern Ocean during five years (2011, 2012, 2013, 2017, and 2018) using passive acoustic data. However, in the El Niño years 2015 and 2016, humpback whales were virtually absent. Our data show that humpback whales are systematically present in the Atlantic sector of the Southern Ocean and suggest that these whales are particularly sensitive to climate oscillations which have profound effects on winds, sea ice extent, primary production, and especially krill productivity.

Large-scale spatial variabilities in the humpback whale acoustic presence in the Atlantic sector of the Southern Ocean.

Southern Hemisphere humpback whales (Megaptera novaeangliae) inhabit a wide variety of ecosystems including both low- and high-latitude areas. Understanding the habitat selection of humpback whale populations is key for humpback whale stock management and general ecosystem management. In the Atlantic sector of the Southern Ocean (ASSO), the investigation of baleen whale distribution by sighting surveys is temporally restricted to the austral summer. The implementation of autonomous passive acoustic monitoring, in turn, allows the study of vocal baleen whales year-round. This study describes the results of analysing passive acoustic data spanning 12 recording positions throughout the ASSO applying a combination of automatic and manual analysis methods to register humpback whale acoustic activity. Humpback whales were present at nine recording positions with higher acoustic activities towards lower latitudes and the eastern and western edges of the ASSO. During all months, except December (the month with the fewest recordings), humpback whale acoustic activity was registered in the ASSO. The acoustic presence of humpback whales at various locations in the ASSO confirms previous observations that part of the population remains in high-latitude waters beyond austral summer, presumably to feed. The spatial and temporal extent of humpback whale presence in the ASSO suggests that this area may be used by multiple humpback whale breeding populations as a feeding ground.

Fin whale (Balaenoptera physalus) mitogenomics: A cautionary tale of defining sub-species from mitochondrial sequence monophyly.

The advent of massive parallel sequencing technologies has resulted in an increase of studies based upon complete mitochondrial genome DNA sequences that revisit the taxonomic status within and among species. Spatially distinct monophyly in such mitogenomic genealogies, i.e., the sharing of a recent common ancestor among con-specific samples collected in the same region has been viewed as evidence for subspecies. Several recent studies in cetaceans have employed this criterion to suggest subsequent intraspecific taxonomic revisions. We reason that employing intra-specific, spatially distinct monophyly at non-recombining, clonally inherited genomes is an unsatisfactory criterion for defining subspecies based upon theoretical (genetic drift) and practical (sampling effort) arguments. This point was illustrated by a re-analysis of a global mitogenomic assessment of fin whales, Balaenoptera physalus spp., published by Archer et al. (2013), which proposed to further subdivide the Northern Hemisphere fin whale subspecies, B. p. physalus. The proposed revision was based upon the detection of spatially distinct monophyly among North Atlantic and North Pacific fin whales in a genealogy based upon complete mitochondrial genome DNA sequences. The extended analysis conducted in this study (1676 mitochondrial control region, 162 complete mitochondrial genome DNA sequences and 20 microsatellite loci genotyped in 380 samples) revealed that the apparent monophyly among North Atlantic fin whales reported by Archer et al. (2013) to be due to low sample sizes. In conclusion, defining sub-species from monophyly (i.e., the absence of para- or polyphyly) can lead to erroneous conclusions due to relatively "trivial" aspects, such as sampling. Basic population genetic processes (i.e., genetic drift and migration) also affect the time to the most recent common ancestor and hence the probability that individuals in a sample are monophyletic.